This package contains functions for summarizing data for scientific publication. This includes making a “Table 1” to summarize demographics across groups, correlation tables with significance indicated by stars, and extracting formatted statistical summarizes from simple tests for in-text notation. The package also includes functions for Winsorizing data based on a Z-statistic cutoff.
apastat - Format simple statistic test results for scientific publication
correltable - Create correlation table (with stars for significance) for scientific publication
FullTable1 - Create Table1 of group summary with stats for scientific publication
gg_groupplot - Create ggplot to display group differences (box+point+hist) winsorZ_find - Identify outliers based on z-score cutoff that are Winsorized by the
winsorZ - Winsorize outliers based on z-score cutoff to next most extreme non-outlier value
You can install the released version of scipub from CRAN with:
You can install the development version from GitHub with:
# install.packages("devtools") devtools::install_github("dpagliaccio/scipub")
This is a basic example:
library(scipub) correltable(data=psydat) #> Warning: Converting non-numeric columns to factor: Sex,Income #> $table #> Age Sex Income Height iq depressT anxT #> Age t=-1.86 F=4.17* .41*** .09*** .02 -.01 #> Sex χ2=0.72 t=0.83 t=1.25 t=-4.87*** t=-5.76*** #> Income F=1.15 F=364.33*** F=31.18*** F=16.26*** #> Height .04* -.01 -.01 #> iq -.08*** -.06*** #> depressT .61*** #> anxT #> #> $caption #>  "Note. This table presents Pearson correlation coefficients with pairwise deletion. N=4 missing Sex. N=404 missing Income. N=7 missing Height. N=179 missing iq. N=8 missing depressT. N=8 missing anxT. Group differences for continuous and categorical\n variables are indicated by t-statistic/ANOVA F\n and chi-squared, respectively. * p<.05, ** p<.01, *** p<.001"